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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015867373.1_cds_XP_016433100.1_29283
CDS Infomation

[gene=LOC107759633] [db_xref=GeneID:107759633] [protein=probable polygalacturonase At3g15720 isoform X2] [protein_id=XP_016433100.1] [location=complement(join(177435..177922,178719..179050,182820..183415))] [gbkey=CDS]
Sequence

ATGTTTCAACTTCAATTACTCCTCTCACTTCTCACTTTATCTTTCAGTACCCAGTCATAT
TCTTCCACGTCGGGACTCTCCATCCTCCCATCAAAACCCAACTCCCTATCCATCTCCGTC
ACCAAATTCGGCGCCGCCGGCGACGGCACACACTACGACACAGTTCCAATCCAGAAAGCC
ATAAACGCATGCTCAGGAGCCGTTTTCACACACCAGCGTCAATGCCACGTCATCTTCCCC
CCGGGGAAATACTTAACGGCGACAATATTCCTGAAATCCGGTGTCTTACTGGATATTCAC
CGGAATGCGACAATTTTAGGAGGACCGAGATTGGAGGATTACCCGAACGAGCGGAACAGG
TGGTATGTAGTACTAGCGGAGGATGCGGCGGATGTAGGGATTACCGGAGGTGGAGAAATC
AACGGACAGGGATTGAAGTTTGTGCAGAGATTTGATGACAAGAAAAATGTAATGGTGAGC
TGGAACCACACCGGAGCTTGCCTTGGGGATGAGTGCAGGCCGAGGTTGGTAGGGTTTATC
GGCTGCCGGAATATTGATATCTCCGATGTCAGACTCATCGAGCCTGCTCTTTGGTGTTTG
CATCTTGTACGAAGTGATAACACATCAATCAGTGATGTAACGATATATGGGGACTTCAAT
TCACCTAACAACGATGGGATAGACATAGAAGACTCTAACAATACGGTCATCACCAGATGC
AACATAAACACAGGAGATGATGCTATCTGTCCAAAGTCATCAACTGGACCTGTCCACAAC
CTCACAGCAACAAACTGCTGGATTCGAACAAAATCTTCTGCCATCAAACTTGGAAGCGCT
AGCTTTTATACATTCAAGAATTTCTTATTTGACAATATTACAATATCTGAATCTCATAGA
GGCCTCGCCCTGCAAATTCGAGATGGAGGAAATGTTAGCGACATCACCTTCTCAAACATA
AACATTAGCACAAGATATTACCACCCATCGTGGTGGGGAAGAGCAGAGCCTATTTATGTA
ACAACCTGTCCAAGAGATGCAACTTCAAAAGCAGGTTCCATCTCCAAGTTGCTATTTGTC
AATATCACATCAACTTCTGAAAACGGCATCTTTTTATCGGGGTCGGGAGGTGGAGTCCTG
AGCAATCTGAAGTTCATAAACATGAACCTAACATACAAGAGATGGACAAAATATCCAGAT
GGTTGGGTGGATTACAGGCCAGGATGCCAAGAACTTGTAAAACACCAAACTGCTGGATTC
ATGATGGAGCATATCGATGGTTTGGTTTTCGAAAATGTAGTCATGAAATGGTCTAATGAT
GAATCAATGAGGTGGAATAATCCTTTGGATTTCAGGCCATCGACTGTAAATAACATTTCT
ATGCTCAATTTCTACTCCAGATCTTACCAACAATGA

Peptide Sequence

PEP ID

XP_016433100.1
PEP Infomation

PREDICTED: probable polygalacturonase At3g15720 isoform X2 [Nicotiana tabacum]
Sequence

MFQLQLLLSLLTLSFSTQSYSSTSGLSILPSKPNSLSISVTKFGAAGDGTHYDTVPIQKA
INACSGAVFTHQRQCHVIFPPGKYLTATIFLKSGVLLDIHRNATILGGPRLEDYPNERNR
WYVVLAEDAADVGITGGGEINGQGLKFVQRFDDKKNVMVSWNHTGACLGDECRPRLVGFI
GCRNIDISDVRLIEPALWCLHLVRSDNTSISDVTIYGDFNSPNNDGIDIEDSNNTVITRC
NINTGDDAICPKSSTGPVHNLTATNCWIRTKSSAIKLGSASFYTFKNFLFDNITISESHR
GLALQIRDGGNVSDITFSNINISTRYYHPSWWGRAEPIYVTTCPRDATSKAGSISKLLFV
NITSTSENGIFLSGSGGGVLSNLKFINMNLTYKRWTKYPDGWVDYRPGCQELVKHQTAGF
MMEHIDGLVFENVVMKWSNDESMRWNNPLDFRPSTVNNISMLNFYSRSYQQ

Transcript Sequence

Gene sequence data has not been registered.